Update README.md

README.md

@@ -9,4 +9,13 @@ Batch
              Synchronization
 
 ## compute_tpm.py
-Used to TPM (transcript per million reads) normalize a raw Gene Expression matrix. 
+Used to TPM (transcript per million reads) normalize a raw Gene Expression matrix. 
\ No newline at end of file
+
+## assemble_GE_matrix.R
+Used to assemble a gene expression matrix [nb_gene x nb_samples] from star readcounts output files
+
+## run_limma.R
+Used to run a limma DEGanalysis on a GE matrix (tpm transformed)
+
+## run_deseq.R
+Used to run a DESEQ2 DEGanalysis on a GE matrix (unnormalized)