From 142135894827fa68816c00b67c5f7b3eabc6a54b Mon Sep 17 00:00:00 2001
From: p1116214 <leonard.sauve@umontreal.ca>
Date: Fri, 7 Jun 2019 13:31:23 -0400
Subject: [PATCH] Update README.md

---
 README.md | 11 ++++++++++-
 1 file changed, 10 insertions(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 749abe6..af7c5a2 100644
--- a/README.md
+++ b/README.md
@@ -9,4 +9,13 @@ Batch
              Synchronization
 
 ## compute_tpm.py
-Used to TPM (transcript per million reads) normalize a raw Gene Expression matrix. 
\ No newline at end of file
+Used to TPM (transcript per million reads) normalize a raw Gene Expression matrix. 
+
+## assemble_GE_matrix.R
+Used to assemble a gene expression matrix [nb_gene x nb_samples] from star readcounts output files
+
+## run_limma.R
+Used to run a limma DEGanalysis on a GE matrix (tpm transformed)
+
+## run_deseq.R
+Used to run a DESEQ2 DEGanalysis on a GE matrix (unnormalized)
-- 
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