- Jul 20, 2020
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Guillaume Poirier-Morency authored
Remove code for detecting FASTA formats and instead rely on the user providing explicitly the format via a specialized flag. Add --ncbi-targets, --gencode-targets, --mirbase-targets flags to the binary.
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- Mar 30, 2020
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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- Mar 29, 2020
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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- Mar 24, 2020
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Guillaume Poirier-Morency authored
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- Mar 22, 2020
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
Use /opt/intel/mkl as a default path for mkl_root.
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- Mar 21, 2020
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Guillaume Poirier-Morency authored
Each warning that suggest a dependency now also include a corresponding configuration flag. We already have explicit flags for enabling MKL LAPACK and FFTW3, so the warning messages have been removed.
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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- Mar 20, 2020
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
This strategy prevents many useless allocations for lines in-between sequence records by positioning the stream on the beginning of a new record. It also simplifies the parsing code since we don't need to check line[0] anymore.
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Guillaume Poirier-Morency authored
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- Mar 19, 2020
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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- Mar 18, 2020
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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- Mar 17, 2020
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
The filter relies on hashing MirbookingOccupant structures in order to determine if an interaction is to be filtered out by the broker. Move MirbookingOccupant-related routines into mirbooking-occupant.c and add corresponding declaration in the header file to reuse them in the binary. Add an integration test to make sure that the blacklist filtering is working.
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- Mar 14, 2020
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
The new GFile-based output format writer does not support opening /dev/null in replace mode. Moreover, it's useful to view the output format when testing to assess if the correct output is produced (requires meson test -v).
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Guillaume Poirier-Morency authored
Conflicts: tests/meson.build
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Guillaume Poirier-Morency authored
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- Jan 27, 2020
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Guillaume Poirier-Morency authored
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Guillaume Poirier-Morency authored
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