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Commit c82433da authored by sauves's avatar sauves
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fixed false GL entry bug

parent 14213589
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......@@ -22,6 +22,7 @@ def main():
GL = pd.read_csv(args.GL_FILE, names = ['ensbl_stable_ID'])
GL['ensblID'] = [ensg.split('.')[0] for ensg in GL.ensbl_stable_ID]
GL = GL[GL.ensblID.str.contains('^ENSG', regex = True)]
GL['idx'] = np.arange(GL.shape[0])
GE = pd.read_csv(args.GE_FILE, sep = ' ')
if args.VERBOSE > 0: print('Filtering on {}...'.format(args.TPT_TYPE))
......
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