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Created with Raphaël 2.2.019Feb7Aug28Jun2531May16Apr156Mar127Feb18Dec8Sep723Jul212021Apr30Mar2925242221201918171427Jan252217Dec161125Sep2016151413121097652130Aug29281487629Jul26252322201143226Jun7328May161387527Apr2625962131Mar3025181514131265425Feb23212019171615141397643131Jan302928262520191111Dec107430Nov29282523201424Oct19181721Sep12875432Aug31Jul302711Jun4131May2718176324Apr1916143Mar2116Feb109726Jan226Dec22Nov34Oct325Sep1843125Aug24232115141211108654131Jul2927262524201210754328Jun2726Add missing check for -Dwith_mkl in in testsmastermasterBump patch version to 2.4.3v2.4.3v2.4.3Add missing check for -Dwith_mkl in in testsAdd check for -Dwith_mkl and adjust warnings when it is missingAdd a citation to README.mdAdd tool for preparing input quantificationsAdd check for -Dwith_mkl and adjust warnings when it is missingConfigure SAST in `.gitlab-ci.yml`, creating this file if it does not already existset-sast-config-1set-sast-config-1Add a citation to README.mdBump patch version to 2.4.2v2.4.2 stable/2.4v2.4.2 stable/2.4tests: Fix required version in GI testBump patch version to 2.4.1v2.4.1v2.4.1Bump API versiontests: Fix required version in GI testAdd tool for preparing input quantificationsBump API versionBump minor version to 2.4.0v2.4.0v2.4.0Fix type for traversing target sequencessparse: Fix initialization of dense matricesMove cuda_toolkit_api_version variable under contrib/sparsesparse: Fix status type for cuSPARSE routineRemove MKL LAPACK integration testFix minor GCC warningsmkl: Move to compilevars.sh to setup MKL environmentwip/mkl-compile…wip/mkl-compilevarsmkl-cluster: Ensure that -Dwith_mpi is setmkl: Fix check for 64-bit BLAS conflicts and drop with_mkl_lapack flagsparse: Breakdown sparse.c in multiple modulesdefault-score-table: Simplify compute_positions routineUpdate README.md with new FASTA flavour flagsAdd .gitlab-ci.ymlwip/gitlab-ciwip/gitlab-ciUse explicit flags for FASTA flavoursAdd a prototype for Becket et al. 2019 modelwip/beckerwip/beckerAdd 'none' as a choice for --supplementary-model69-use-becker-e…69-use-becker-et-al-2019-model-for-kd-and-kcatUse Yan et al. 2018 supplementary model by default (fix #90)mirbooking: Add missing static qualifiersmirbooking: Remove [FILE] indicationmirdesign: Add an integration testmirdesignmirdesignmirdesign: Use Python 3.5 subprocess.run APIWIPlogit