pyIRICdata - A python API for interacting with IRIC-data

module load python/3.6.7
# create your virtual environment if not already installed
python3 -m venv ~/.virtualenvs/iric-data
source ~/.virtualenvs/iric-data/bin/activate

pip install --upgrade pip setuptools wheel
pip install -e .

from pyiricdata.Client import Client

username = 'test'
password = 'test1234'
url = 'http://127.0.0.1:8000/'

# setup client
client = Client(username, password, url)

# view datasets
client.datasets

# view dataset files
client.get_dataset_filelist('DS12345678')

# download complete dataset
client.dwnl_dataset('DS12345678')

# or just download a single file
client.dwnl_file_content('DF12345678')
client.dwnl_file_annotation('DF12345678')

# upload file (file_path, file_name, lab, dataset, annotations)
file_path = '/home/user/file.txt'
file_name = 'file1'
lab = 'Bioinformatique'
dataset = 'DS12345678'
annotations = {"file_has": "cool_annotation"}

client.file_upload(file_path=file_path, file_name=file_name, lab=lab, dataset=dataset, annotations=annotations)

# update file (file_id, file_name, annotations, lab)
file_id = 'DF12345680'
file_name = 'file1'
lab = 'Bioinformatique'
annotations = {"file_has": "cool_annotation"}

client.file_update(file_id=file_id, file_name=file_name, annotations=annotations, lab=lab)