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bioinfo_iric
iric-data
Commits
fe7a4e14
Commit
fe7a4e14
authored
4 years ago
by
Jean-Philippe Laverdure
Browse files
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Merge branch '118-add-possibility-of-querying-annotations-of-datafiles' into 'master'
Resolve "Add possibility of querying annotations of datafiles" Closes
#118
See merge request
!65
parents
ef84f037
ff7f1359
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1 merge request
!65
Resolve "Add possibility of querying annotations of datafiles"
Changes
2
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2 changed files
portal/urls.py
+5
-2
5 additions, 2 deletions
portal/urls.py
portal/views/secure/datafile.py
+38
-16
38 additions, 16 deletions
portal/views/secure/datafile.py
with
43 additions
and
18 deletions
portal/urls.py
+
5
−
2
View file @
fe7a4e14
...
@@ -17,6 +17,7 @@ from .views.secure.datafile import (DataFileAnnotateView,
...
@@ -17,6 +17,7 @@ from .views.secure.datafile import (DataFileAnnotateView,
DataFileDeleteView
,
DataFileDetailsView
,
DataFileDeleteView
,
DataFileDetailsView
,
DataFileDownloadView
,
DataFileDownloadView
,
DataFileHasKeyJSONListView
,
DataFileHasKeyJSONListView
,
DataFileHasAnnotJSONListView
,
DataFileMetadataJSONView
,
DataFileMetadataJSONView
,
DataFilesJSONListView
,
DataFilesView
,
DataFilesJSONListView
,
DataFilesView
,
DataFileUpdateView
,
DataFileUpdateView
,
...
@@ -72,8 +73,10 @@ urlpatterns = [
...
@@ -72,8 +73,10 @@ urlpatterns = [
# Files
# Files
path
(
'
secure/datafiles/
'
,
DataFilesView
.
as_view
(),
name
=
'
user.datafiles
'
),
path
(
'
secure/datafiles/
'
,
DataFilesView
.
as_view
(),
name
=
'
user.datafiles
'
),
path
(
'
secure/datafiles/list/json/
'
,
DataFilesJSONListView
.
as_view
(),
name
=
'
user.datafiles-json-list
'
),
path
(
'
secure/datafiles/list/json/
'
,
DataFilesJSONListView
.
as_view
(),
name
=
'
user.datafiles-json-list
'
),
path
(
'
secure/datafiles/list/json/<str:key>/
'
,
DataFileHasKeyJSONListView
.
as_view
(),
name
=
'
user.datafiles-json-list
'
),
path
(
'
secure/datafiles/list/json/lookup-key/<str:key>/
'
,
DataFileHasKeyJSONListView
.
as_view
(),
name
=
'
user.datafiles-json-list
'
),
path
(
'
secure/datafiles/list/json/<str:key>/<str:dataset>/
'
,
DataFileHasKeyJSONListView
.
as_view
(),
name
=
'
user.datafiles-json-list
'
),
path
(
'
secure/datafiles/list/json/lookup-key/<str:key>/<str:dataset>/
'
,
DataFileHasKeyJSONListView
.
as_view
(),
name
=
'
user.datafiles-json-list
'
),
path
(
'
secure/datafiles/list/json/lookup-value/<str:value>/
'
,
DataFileHasAnnotJSONListView
.
as_view
(),
name
=
'
user.datafiles-json-list
'
),
path
(
'
secure/datafiles/list/json/lookup-value/<str:value>/<str:dataset>/
'
,
DataFileHasAnnotJSONListView
.
as_view
(),
name
=
'
user.datafiles-json-list
'
),
path
(
'
secure/shared-datafiles/
'
,
SharedWithMeDataFilesView
.
as_view
(),
name
=
'
user.shared-datafiles
'
),
path
(
'
secure/shared-datafiles/
'
,
SharedWithMeDataFilesView
.
as_view
(),
name
=
'
user.shared-datafiles
'
),
path
(
'
secure/shared-datafiles/list/json/
'
,
SharedWithMeDataFilesJSONListView
.
as_view
(),
name
=
'
user.shared-datafiles-json-list
'
),
path
(
'
secure/shared-datafiles/list/json/
'
,
SharedWithMeDataFilesJSONListView
.
as_view
(),
name
=
'
user.shared-datafiles-json-list
'
),
path
(
'
secure/datafiles/annotate
'
,
DataFileAnnotateView
.
as_view
(),
name
=
'
user.datafile-annotate
'
),
path
(
'
secure/datafiles/annotate
'
,
DataFileAnnotateView
.
as_view
(),
name
=
'
user.datafile-annotate
'
),
...
...
This diff is collapsed.
Click to expand it.
portal/views/secure/datafile.py
+
38
−
16
View file @
fe7a4e14
...
@@ -490,24 +490,9 @@ class DataFileDeleteView(LoginRequiredMixin, DeleteViewMixin, DeleteView):
...
@@ -490,24 +490,9 @@ class DataFileDeleteView(LoginRequiredMixin, DeleteViewMixin, DeleteView):
return
HttpResponseRedirect
(
self
.
get_success_url
())
return
HttpResponseRedirect
(
self
.
get_success_url
())
class
DataFile
HasKey
JSONListView
(
LoginRequiredMixin
,
JSONListView
):
class
DataFile
Lookup
JSONListView
(
LoginRequiredMixin
,
JSONListView
):
model
=
DataFile
model
=
DataFile
def
get_queryset
(
self
):
qs
=
DataFile
.
objects
.
accessible_to_profile
(
self
.
request
.
user
.
profile
)
key
=
self
.
kwargs
.
get
(
'
key
'
,
None
)
qs
=
qs
.
filter
(
annotations__has_key
=
key
)
dataset
=
self
.
kwargs
.
get
(
'
dataset
'
,
None
)
logger
.
debug
(
dataset
)
if
dataset
and
re
.
match
(
'
DS[A-F0-9]{8}
'
,
dataset
):
qs
=
qs
.
filter
(
datasets__iric_data_id
=
dataset
)
return
qs
.
distinct
()
def
get_rows
(
self
):
def
get_rows
(
self
):
rows
=
[]
rows
=
[]
...
@@ -527,3 +512,40 @@ class DataFileHasKeyJSONListView(LoginRequiredMixin, JSONListView):
...
@@ -527,3 +512,40 @@ class DataFileHasKeyJSONListView(LoginRequiredMixin, JSONListView):
rows
.
append
(
row
)
rows
.
append
(
row
)
return
rows
return
rows
class
DataFileHasKeyJSONListView
(
DataFileLookupJSONListView
):
def
get_queryset
(
self
):
qs
=
DataFile
.
objects
.
accessible_to_profile
(
self
.
request
.
user
.
profile
)
key
=
self
.
kwargs
.
get
(
'
key
'
,
None
)
qs
=
qs
.
filter
(
annotations__has_key
=
key
)
dataset
=
self
.
kwargs
.
get
(
'
dataset
'
,
None
)
logger
.
debug
(
dataset
)
if
dataset
:
qs
=
qs
.
filter
(
datasets__iric_data_id
=
dataset
)
return
qs
.
distinct
()
class
DataFileHasAnnotJSONListView
(
DataFileLookupJSONListView
):
def
get_queryset
(
self
):
qs
=
DataFile
.
objects
.
accessible_to_profile
(
self
.
request
.
user
.
profile
)
value
=
self
.
kwargs
.
get
(
'
value
'
,
None
)
qs
=
qs
.
filter
(
annotations__values__icontains
=
value
)
dataset
=
self
.
kwargs
.
get
(
'
dataset
'
,
None
)
logger
.
debug
(
dataset
)
if
dataset
:
qs
=
qs
.
filter
(
datasets__iric_data_id
=
dataset
)
return
qs
.
distinct
()
\ No newline at end of file
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