1. 27 Jun, 2021 1 commit
  2. 25 Jun, 2021 1 commit
  3. 16 Apr, 2021 2 commits
    • Guillaume Poirier-Morency's avatar
      96297926
    • Guillaume Poirier-Morency's avatar
      Add tool for preparing input quantifications · 1e802d8f
      Guillaume Poirier-Morency authored
      Add basic support for GENCODE and miRBase FASTA format.
      
      Add support for reading RSEM, HTSeq and TSV counts.
      
      Use a geometric mean when replicated gene expression are provided with a
      log(X+1) transformation.
      
      The quantification is based on the assumption that the total
      concentration of protein-coding transcripts and microRNA in the
      cytoplasm is preserved across tissue types. We use a model of a HeLa S3
      cell to estimate the number of species and the cytoplasmic volume.
      1e802d8f
  4. 15 Apr, 2021 1 commit
  5. 01 Mar, 2021 2 commits
  6. 27 Feb, 2021 2 commits
  7. 18 Dec, 2020 2 commits
  8. 07 Sep, 2020 3 commits
  9. 23 Jul, 2020 1 commit
  10. 21 Jul, 2020 1 commit
  11. 20 Jul, 2020 1 commit
    • Guillaume Poirier-Morency's avatar
      Use explicit flags for FASTA flavours · 3b507dbb
      Guillaume Poirier-Morency authored
      Remove code for detecting FASTA formats and instead rely on the user
      providing explicitly the format via a specialized flag.
      
      Add --ncbi-targets, --gencode-targets, --mirbase-targets flags to the
      binary.
      3b507dbb
  12. 30 Mar, 2020 2 commits
  13. 29 Mar, 2020 2 commits
  14. 24 Mar, 2020 1 commit
  15. 22 Mar, 2020 2 commits
  16. 21 Mar, 2020 4 commits
  17. 20 Mar, 2020 4 commits
  18. 19 Mar, 2020 2 commits
  19. 18 Mar, 2020 3 commits
  20. 17 Mar, 2020 3 commits